That's interesting. I'd say that's a shortcoming of the Trinity software if it allows you to do that. Such is the price of the race to be first by Diablosport, address the issues as they arise. Might need a tow to the dealer now.
Whilst everyone knows, one Trinity one car, the software should still have stopped this happening, imho.
Edit: Just noticed your post. Man, lucky you have a great onside dealer.
Edit 2: BRILLIANT IDEA NUMBER 1. At the time you plug your car in at the dealers to have it reflashed..... have BOTH cars there so that if they say "hey that's the wrong vin number" the dealer can say back to them "wait that's the vin of the car we had plugged in a minute ago, how the hell did that happen!". If you get what I mean.